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fujitsu:hpcgateway:training:tutorials [2017/04/11 16:44]
fujitsu
fujitsu:hpcgateway:training:tutorials [2017/04/20 12:44]
fujitsu
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-====== Screencast Video Tutorials ======+======= Screencast Video Tutorials ​=======
  
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-===== Running a single application task =====+====== Running a single application task ======
  
 Individual applications - batch and interactive - are primarily utilised through the Gateway Application Management tool. This section illustrates how to use embedded applications through several common packages used in the HPC community. Individual applications - batch and interactive - are primarily utilised through the Gateway Application Management tool. This section illustrates how to use embedded applications through several common packages used in the HPC community.
-  * **OpenFOAM** to solve a computational fluid dynamic (CFD) problem. 
-  * **ParaView** to visualise the result of the preceding OpenFOAM calculation. 
-  * **DL_POLY Classic** to solve a molecular dynamics (MD) problem. 
-  * **VMD** to visualise the result of the DL_POLY calculation. 
  
 +  * **OpenFOAM** ​ to solve a computational fluid dynamic (CFD) problem.
 +  * **ParaView** ​ to visualise the result of the preceding OpenFOAM calculation.
 +  * **DL_POLY Classic** ​ to solve a molecular dynamics (MD) problem.
 +  * **VMD** ​ to visualise the result of the DL_POLY calculation.
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 The Gateway at the FSE data centre includes an application named **OpenFOAM Main**. This runs the OpenFOAM application using 3 stages: The Gateway at the FSE data centre includes an application named **OpenFOAM Main**. This runs the OpenFOAM application using 3 stages:
  
-   - //Prolog//: Runs commands provided by the user in serial mode only. Normally used to create the mesh and set parameters and characteristics of the model to be solved. The mesh decomposition is done implicitly by the application.+  ​- //Prolog//: Runs commands provided by the user in serial mode only. Normally used to create the mesh and set parameters and characteristics of the model to be solved. The mesh decomposition is done implicitly by the application.
   - //​Execute//:​ Runs the solver(s) specified by the user. These executables are run in parallel mode.   - //​Execute//:​ Runs the solver(s) specified by the user. These executables are run in parallel mode.
   - //Epilog//: For automated post-processing,​ such as reconstructing the decomposed solution directories into a single result directory.   - //Epilog//: For automated post-processing,​ such as reconstructing the decomposed solution directories into a single result directory.
- 
  \\ The video for this tutorial is located [[https://​youtu.be/​SlakAbSrMD8|here]]. Right-click to open in a new tab.  \\ The video for this tutorial is located [[https://​youtu.be/​SlakAbSrMD8|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​screencast_openfoam_city_02.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​screencast_openfoam_city_02.png?​600}}
  
 The full list of inputs are given in the following table. The full list of inputs are given in the following table.
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 ^OpenFOAM script for epilog phase |reconstructPar -latestTime | ^OpenFOAM script for epilog phase |reconstructPar -latestTime |
  
-\\ 
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 The video for this tutorial is located [[https://​youtu.be/​IPtaIpuH94c|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​IPtaIpuH94c|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​screencast_paraview_city_02.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​screencast_paraview_city_02.png?​600}}
  
 The full list of inputs are given in the following table. The full list of inputs are given in the following table.
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  \\ Follow the keystrokes in the video to see how to adjust the displayed results. Left-click and drag the mouse in the 3D image panel to change the viewing angle.  \\ Follow the keystrokes in the video to see how to adjust the displayed results. Left-click and drag the mouse in the 3D image panel to change the viewing angle.
  
-\\ 
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 ==== DL_POLY Classic ==== ==== DL_POLY Classic ====
  
-<​code>​ Under development </​code>​+<​code>​ 
 + Under development 
 +</​code>​
  
 The video for this tutorial is located [[https://​youtu.be/​n8eXuaikK20|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​n8eXuaikK20|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​dl_poly_classic_test10.1.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​dl_poly_classic_test10.1.png?​600}}
  
-\\ 
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 ==== VMD ==== ==== VMD ====
  
-<​code>​ Under development </​code>​+<​code>​ 
 + Under development 
 +</​code>​
  
 The video for this tutorial is located [[https://​youtu.be/​n8eXuaikK20|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​n8eXuaikK20|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​dl_poly_classic_test10.2.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​dl_poly_classic_test10.2.png?​600}}
  
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 The video for this tutorial is located [[https://​youtu.be/​hoAgHNMURY8|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​hoAgHNMURY8|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​application_editing_step1.2.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​application_editing_step1.2.png?​600}}
  
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 The video for this tutorial is located [[https://​youtu.be/​jl6LKF9V6iI|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​jl6LKF9V6iI|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​application_editing_step2.1.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​application_editing_step2.1.png?​600}}
  
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 The video for this tutorial is located [[https://​youtu.be/​4ypeZlF8ZFM|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​4ypeZlF8ZFM|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​application_editing_step3.4.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​application_editing_step3.4.png?​600}}
  
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 The video for this tutorial is located [[https://​youtu.be/​s7DOS0sX2Vc|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​s7DOS0sX2Vc|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​application_editing_step4.9.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​application_editing_step4.9.png?​600}}
  
 The following instructions describe the steps within this video. The following instructions describe the steps within this video.
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 The video for this tutorial is located [[https://​youtu.be/​vriLxqoA1vQ|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​vriLxqoA1vQ|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​application_editing_step5.1.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​application_editing_step5.1.png?​600}}
  
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 The video for this tutorial is located [[https://​youtu.be/​7m9uZx8JvT0|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​7m9uZx8JvT0|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​remote_visualisation.rvec.1.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​remote_visualisation.rvec.1.png?​600}}
  
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 The video for this tutorial is located [[https://​youtu.be/​bLSZ80Jm6U4|here]]. Right-click to open in a new tab. The video for this tutorial is located [[https://​youtu.be/​bLSZ80Jm6U4|here]]. Right-click to open in a new tab.
  
-{{:​fujitsu:​hpcgateway:​training:​remote_visualisation.rvec.4.png?​600|}}+{{:​fujitsu:​hpcgateway:​training:​remote_visualisation.rvec.4.png?​600}}
  
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